This function creates a combined dataframe using input eQTL annotations, and sample genotype dataframe.
Usage
constructEqtlGeno(
eqtl_annot_df,
geno_df,
sampid_vec,
name = NULL,
feature_colname = "gene_name",
celltype_colname = "cell_type",
snp_colname = "snp_id",
loc_colname = "POS"
)Arguments
- eqtl_annot_df
eQTL annotation dataframe
- geno_df
eQTL by sample genotype dataframe
- sampid_vec
sample id vector
- name
string or integer scalar to identify input
- feature_colname
feature variable name
- celltype_colname
cell type variable name
- snp_colname
SNP id variable name
- loc_colname
SNP position variable name